Top Prebiotic Foods for Gut Health

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Top Prebiotic Foods for Gut Health

This is the second of two posts on this topic. The first looks at the health benefits of prebiotics in detail.

Prebiotics are types of dietary fibre that arrive un-digested at the colon, where they are readily fermented  by beneficial bacteria, allowing them to grow and thrive. In order to be classed as a prebiotic, they must be selectively fermented by these good bugs – particularly, the Lactobaccili and Bifidobacteria genus, whilst being ignored by pathogenic bacteria. The by-products created during this fermentation include short-chain fatty acids such as acetate, propionate and butyrate. Short-chain fatty acids provide a fuel source for the enterocytes – that is – the cells of the intestinal wall.

The benefits of stimulating the growth and activity of both beneficial bacteria and mucosal cells are many. They include a healthy gut barrier that protects against invasion of pathogens or toxins, greater resistance to infection, modulation of the immune system and inflammation, stimulation of peristalsis (promoting healthy bowel movements), and increased absorption of minerals such as calcium and magnesium. Examples of different types of prebiotic fibres include fructo-oligosaccharides (FOS), inulin, galacto-oligosaccharides (GOS), beta glucans, pectin and resistant starch.

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Top Prebiotic Foods For Gut Health

Prebiotics are abundant in fresh fruits, vegetables and legumes, however their content varies widely. Some of the richest sources include chicory root, Jerusalem artichoke and dandelion greens.

Cooking can significantly reduce prebiotic content, whilst drying (as in the case of raw garlic and onion) can significantly increase it [1].

Most of the foods I have selected here are lower in prebiotic content – though I believe daily consumption of low to moderate sources of this beneficial fibre is a far more comfortable way to get your quota. For example, a huge amount of chicory root in one sitting might make for quite a bloated and gassy gut! The foods on this list are all readily accessible – depending on the season. They make a great starting point, however, remember that diversity is key!

Literature suggests the ideal daily dosage of prebiotics is 10g/day [2], with dosages less than 3g/day unlikely to stimulate growth of beneficial lactic acid bacteria. Americans seem to be consuming prebiotics in the 1-4g/day range [3]. Interestingly, inflammatory bowel disease develops in parts of the world where daily intake of prebiotic fibre is low [3].

Top Prebiotic Foods for Gut Health


Oats are my absolute favourite functional food. They contain the soluble prebiotic fibre beta-glucan, and have been shown in studies to improve the growth, viability and colonisation of probiotics [4]. Beta-glucans favourably alter lipid profiles, lowering bad ‘LDL’ cholesterol, therefore reducing the risk of heart disease [5].

Studies are suggestive of beta-glucans having an anti-carcinogenic effect, indicating a protective effect against bowel cancer [6]. Additionally, they are known to stimulate the immune system, increasing resistance to bacterial, viral, fungal and parasitic infections [6].

Other sources of beta-glucans include barley, mushrooms and yeast.

I am a huge fan of prebiotic-rich bircher muesli for breakfast, try my recipe here.

Top Prebiotic Foods for Gut Health


Legumes (beans, peas, lentils, soybeans) contain prebiotic galacto-oligosaccharides (GOS), raffinose-family oligosaccharides (ROS) and resistant starch. A recent study found that the GOS extracted from legumes (dose-dependently) significantly increased beneficial bifidobacteria count (without digestive discomfort such as bloating), and reduced appetite, food intake and inflammation in overweight adults [7].

I like to cook legumes with carminative spices such as fennel, ginger or cumin to help avoid boating. The other natural source of GOS is milk – breast milk, and mammalian milk [2]. 

As a side note, I adore legumes as they are one of the most sustainable protein sources. Animal protein sources have the greatest ecological impact – beef being the largest, followed by pork and chicken. The estimated global land use of beef and veal per kilogram of product is between 7 and 420m2, with 9-129 CO2 equivalents per kilogram, whilst legumes sit between 3-8m2 per kilogram of product, with 1-2 CO2 equivalents/kg [8].

Legumes are also great nitrogen fixers, helping to improve the health and quality of the soil and promote plant growth (plants absorb nitrogen via their roots and use it to synthesize proteins). For this reason, it is often used in crop rotation to fertilise the soil and consequently contribute to higher yields.

Two nutrient-dense legume dishes here:

Nourishing Red Lentil Rosemary Soup
How to make Kitchari – an Ayurvedic Healing Meal

Top Prebiotic Foods for Gut Health


Asparagus, best consumed fresh and raw or lightly steamed, contain FOS and inulin [1]. A review of studies found inulin may contribute to weight loss via an increase of satiety and reduction in energy intake [9].

A species of wild asparagus called Asparagus racemosus – known as Shatavari in Ayurvedic Medicine, has been used traditionally for digestive complaints such as diarrhea and dysentery, stomach ulcers and hyperacidity [10].

Asparagus is also a great source of protein and minerals. It is quick to perish so best stored in the fridge with the ends wrapped in a damp paper towel.

Try my lovely Asparagus and Lentil Salad Nicoise – and opt for lightly steamed asparagus.

Top Prebiotic Foods for Gut Health

Garlic, Onions & Leeks

Garlic, onions and leeks are all in the allium family of vegetables and have similar health benefits. All three contain both FOS and inulin [1]. Raw garlic is approximately 13% FOS by fresh weight, raw onions are approximately 4%, and leeks approximately 3% [2]. Raw, dried garlic and onion have greater concentrations of prebiotics.

If you crush or chew raw garlic, the compound allicin (responsible for garlic’s renowned antimicrobial properties) becomes enzymatically activated.  Garlic has been shown to stimulate the growth of Bifidobacteria and promote a low (acidic) pH environment in the colon, which is favourable for beneficial bacteria [11].

Be brave and try my delicious Raw Onion Bread here (it also contains raw garlic for the win, and strangely, it doesn’t give you bad breath!).

Top Prebiotic Foods for Gut Health


Both Jerusalem and globe artichokes are great sources of prebiotic fibre, particularly inulin. Jerusalem artichokes have a short season during late autumn and winter, whilst globe artichokes are available through summer. Jerusalem artichokes (18% inulin by weight) contain significantly more prebiotic fibre than globe’s (4% inulin by weight) [1]. However, there is still enough inulin in globe artichokes to have a positive effect on gut health [12].

Prebiotic Artichokes

Jerusalem Artichokes on the left, Globe Artichoke in flower on the right

Jerusalem artichokes are also known as sunchokes, being a relative of the sunflower. Next time they are in season, try this creamy Roasted Sunchoke and Sage Soup.

Top Prebiotic Foods for Gut Health


Under-ripe bananas contain prebiotics in the form of resistant starch, however, resistance starch content decreases as the fruit ripens [13]. Upon reaching the colon, it is fermented by bacteria to produce short-chain fatty acids, which provide fuel for the cells of the intestine wall, in turn promoting colon health.

There is some evidence to suggest that resistant starch may improve glycaemic control and insulin response, be used in the management of constipation, diarrhoea, and other gastrointestinal disorders, improve blood lipids and lower risk of cardiovascular disease, promote mineral absorption, and play a role in weight loss by increasing satiety [13].

An easy way to include slightly green bananas in the diet is to add them to a smoothie. You can even buy green banana flour now, which could be taken daily for its prebiotic effects or used as an alternative to other starches in baking.

Different types of resistant starch can also be found in foods such as legumes, cooked and cooled potatoes, yacon root and teff.


Apples contain a soluble fibre called pectin, which isn’t as well researched as FOS, inulin and GOS for its prebiotic effects. A recent study found pectin isolated from various fruits (such as wild banana, sweet lemon, watermelon, tomatoes and guavas) enhanced the growth of lactic acid bacteria (lactobacillus spp and bifidobacteria spp) [14].

An animal feeding study found that apple pectin promoted growth of beneficial bacteria, significantly increased production of the short-chain fatty acid butyrate, and significantly decreased the population of species in the Bacteroidetes group [15]. Bacteroides are normally commensal in the gut flora, however, they can be responsible for infections with significant mortality. They are also among the most antibiotic resistant of all anaerobic pathogens [16].

Finally, although raw, unpasteurized apple cider vinegar has been touted as a health wonder drink and source of prebiotics, I can’t find any evidence in support of this.

Try Mum’s Healthy Apple Crumble recipe – made with both apples and oats.

Top Prebiotic Foods for Gut Health

Worth a mention

Chicory root and raw dandelion greens are particularly rich sources of prebiotic fibres (in fact, chicory is the richest source of inulin, with 40g per 100g). I excluded them from my list only because they are a bit less accessible. You will find chicory root sold as a powered coffee alternative, as it has a very similar taste when roasted. It is also available as a supplement. Dandelion greens can be foraged – even from your own garden should you let it become a little wild. They are great in salads or smoothies.

Combine Prebiotics with Probiotics to create synbiotics

When prebiotics are taken with probiotics they work together in synergy. For example – oats with flax seeds and yoghurt, or a lentil curry with a side of pickles.

If you’re after some probiotic-rich food inspiration, have a read of my Top Fermented Foods for Gut Health article here.

And if you want to read further on the Health Benefits of Prebiotics, you can do that here.

Here’s to happy guts!


  1. Moshfegh, A.J., Friday, J.E., Goldman, J.P., & Chug Ahuja, J.K. (1999). Presence of inulin and oligofructose in the diets of Americans. The American Society for Nutritional Sciences, 129(7), 14075-1411s.
  2. Hawrelak, J. (2013). Prebiotics, synbiotics, and colonic foods. In J.E. Pizzorno & M.T. Murray (Eds). Textbook of Natural Medicine (4th pp. 627-632). St Louis, MO: Elsevier Churchill Livingstone.
  3. Looijer-van Langen, M.A.C., & Dieleman, L.A. (2009). Prebiotics in chronic intestinal inflammation. Inflammatory Bowel Disease, 15(3), 454-462.
  4. Russo, P., Lopez, P., Capozzi, V., de Palencia, P.F., Duenas, M.T., Spano, G., & Fiocco, D. (2012). Beta-glucans improve growth, viability and coloniszation of probiotic microorganisms. International Journal of Molecular Sciences, 13(5), 6026-6039.
  5. Braun, L, & Cohen, M. (2015). Herbs & natural supplements. An evidence-based guide (4th ed., Vol. 2). Sydney, Australia: Churchill Livingstone
  6. Mantovani, M.S., Bellini, M.F., Angeli, J.P.F., Oliveira, R.J., Silva, A.F., & Ribeiro, L.R. (2007). B-Glucans in promoting health: Prevention against mutation and cancer. Mutation Research/Reviews in Mutation Research, 658(3), 154-161.
  7. Morel, F.B., Dai, Q.D., Ni, J., Thomas, D., Parnet, P., & Franca-Berthon, P. (2015). A-Galacto-oligosaccharides dose-dependently reduce appetite and decrease inflammation in overweight adults. The Journal of Nutrition, 145(9), 2052-2059.
  8. Westhock, H., Rood, T., van den Berg, M., Janse, J., Nijdam, D., Reudink, M., & Stehfest, E. (2011). The protein puzzle: The consumption and production of meat, dairy and fish in the European Union. Bilthoven: Netherlands Environmental Assessement Agency; PBL-publication number 500166001
  9. Liber, A., & Szajewska, H. (2013). Effects of inulin-type fructans on appetite, energy intake, and body weight in children and adults: Systematic review of randomized controlled trials. Annals of Nutrition & Metabolism, 63(1-2), 42-64.
  10. Bone, K. (2003). A clinical guide to blending liquid herbs: Herbal formulations for the individual patient. Edinburgh, UK: Churchill Livingstone Elsevier
  11. Zhang, N., Huang, X., Zeng, Y., Wu, X., & Peng, X. (2013). Study on prebiotic effectiveness of neutral garlic fructan in vitro. Food Science and Human Wellness, 2(3-4), 119-123.
  12. Goni, I., Jimenez-Escrig, A., Gudiel, M., & Saura-Calixto, F.D. (2005). Artichoke (Cynara scolymus L) modifies bacterial enzymatic activities and antioxidant status in rat cecum. Nutrition Research, 25(6), 607-615.
  13. Nugent, A.P. (2005). Health properties of resistant starch. Nutrition Bulletin, 30(1), 27-54.
  14. Chatterjee, E., Manuel, S.G.A., & Hassan, S.S. (2016). Effect of fruit pectin on growth of lactic acid bacteria. Journal of Probiotics & Health, 4(2).
  15. Licht, T.R., Hansen, M., Bergstrom, A., Poulsen, M., Krath, B.N., Markowski, J., … & Wilcks, A. (2010). Effects of apples and specific apple components on the cecal environment of conventional rats: role of apple pectin. BMC Microbiology, 10(13).
  16. Wexler, H.M. (2007). Bacteroides: The good, the bad, and the nitty-gritty. Clinical Microbiology Reviews, 20(4), 593-621.


Hi I’m Lauren, practising Naturopath, Medical Herbalist, Nutritionist, and essential oils educator in Auckland, New Zealand. I’m incredibly passionate about food as medicine, and helping people connect with the healing power of Nature. I’ve been sharing my recipes and health articles here since 2012.

BNatMed, AdDip NutMed, BCS, Certified FitGenes Practitioner.